Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Read depth filter

Hi there

I wanted to start the move from Unified Genotyper to Haplotype caller. I was just wondering is there an argument to filter for read depth prior to the output of the vcf files?


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