Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

HaplotypeCaller Bug? 0,0 AD

egafniegafni Member
edited August 2015 in Ask the GATK team

Haplotype Caller output this record, how can it have an AD of 0,0?
7 21584892 . T TAA 257.77 . AC=1;AF=0.500;AN=2;DP=118;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=70.00;SOR=4.804 GT:AD:GQ:PL 0/1:0,0:99:125,0,112

GATK version is 3.4-46

Answers

Sign In or Register to comment.