HaplotypeCaller Bug? 0,0 AD

egafniegafni Member
edited August 2015 in Ask the GATK team

Haplotype Caller output this record, how can it have an AD of 0,0?
7 21584892 . T TAA 257.77 . AC=1;AF=0.500;AN=2;DP=118;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=70.00;SOR=4.804 GT:AD:GQ:PL 0/1:0,0:99:125,0,112

GATK version is 3.4-46

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