Normalization of multi allelic polymorphism
I just read the article "Unified Representation of Genetic Variants" (A. Tan)
They propose a way to normalized variants.
As mention in this forum, GATK has a tools to normalized biallelic polymorphism, but does the latest version manage multiallelic polymorphism ?
It is also mentioned that Mills files are note normalized correctly, are the files provided in the package normalized ? at least for biallelic polymorphism ?