Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Normalization of multi allelic polymorphism
I just read the article "Unified Representation of Genetic Variants" (A. Tan)
They propose a way to normalized variants.
As mention in this forum, GATK has a tools to normalized biallelic polymorphism, but does the latest version manage multiallelic polymorphism ?
It is also mentioned that Mills files are note normalized correctly, are the files provided in the package normalized ? at least for biallelic polymorphism ?