Splitting a vcf file into seperate files per sample

FeeFee BerlinMember
edited August 2015 in Ask the GATK team

Hey, sorry, but I'm stuck with a stupid problem and I have seen this question in the forum, but couldn't find an answer that works for me:

I need to split a HaplotypeCaller vcf output file with around 200 samples into single vcf files per sample. I wanted to use selectvariants for this, but with -sn I would have to enter the samples one by one. Is there any way to split all the samples at once? Thanks for your help! Fee


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