more reads in bamout file

Hi GATK team,
I'm using GATK v3.4 to call SNPs from RNA-Seq data. I generated a bamout file and viewed it in IGV, I expected to see the same or lower number of reads in the bamout file, but, strangely, I saw a lot of cases with higher reads in bamout than in the orignial. Do you know why this is happening? Thank you in advance!

Best Answers

Answers

Sign In or Register to comment.