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Documentation error in StrandOddsRatio page
There seems to be a documentation error on this page:
refRatio and altRatio should be calculated as min/max rather than max/min values. That is what is in code here: https://github.com/broadgsa/gatk-protected/blob/master/protected/gatk-tools-protected/src/main/java/org/broadinstitute/gatk/tools/walkers/annotator/StrandOddsRatio.java
assuming the two correspond to each other. I coded it the same way myself and get more precise results too.