If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Lack of hard drive space in the middle of running GATK
I ran out of hard drive space while combining a large number of GVCFs with the CombineGVCF Tool. I moved a bunch of files and have plenty of disc space now, but I'm wondering if my combined.g.vcf files will have errors... do I need to redo them? Is there some way to check for problems?