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files to run MuTect with hg19 reference

varshavarsha FloridaMember

To run MuTect with hg19 reference - if I use ucsc.hg19.fasta, can I use dbsnp_138.hg19.vcf and b37_cosmic_v54_120711.vcf (from the download page)? The previous forums seemed quite confusing and were not recent. Please let me know. Thank you.

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