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EM estep failed correction: 40 40.33333333333334

SunhyeSunhye KoreaMember

I have a question in a previous post.
http://gatkforums.broadinstitute.org/discussion/5794/a-partical-error-for-cnv-stage7#latest

I wonder whether the cause of error is associated about the specific sample or not.
If so, I remove the specific sample, then Can I proceed CNVDiscovery?

I think this error do not match between the EM algorthm's expected value and the observed value in CNV_4_173429108_173430246_4:173429885-173430812.

My hope is that CNVDisovery.q is perfectly done, but I once want to finish except this region(CNV_4_173429108_173430246_4:173429885-173430812).
What should I do then?

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