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Does ReCapSeg support WGS?
Currently, we do not support WGS data in ReCapSeg.
This is because we have not done a formal evaluation on WGS bams. While ReCapSeg can definitely process WGS data and return reasonable results, we have not characterized the performance, which may be poor. Until we (the dev team) have done our own evaluation and created a standard (Broad) PoN, we do not support WGS.