Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Does it matter if the intervals of interest file is lexicographicaly sorted or not?

Meaning does it matter if my intervals file goes chr1, chr10, instead of chr1, chr2 ? Additionally, will a command line error occur if bam files are not sorted in coordinate order with respect to the reference?
Thank you
-Best
Steve

Tagged:

Best Answer

Answers

Sign In or Register to comment.