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Including certain patches in the GATK resource bundle
I noticed that the GATK resource bundle does not have all the patches from here (http://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.25/#/def_asm_PATCHES). I need to add a few like GL582971.1. This brings me to my question:
1. For the GL's included by default in the bundle what was their inclusion criterion?
Do you have a resource bundle which has ALL the GL's as per the release notes on NCBI (above link)?
If I were to add a few, what is the process you'd recommend?