If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!

Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Input bamfiles have different Phred Score both Phred+64 and Phred+33

SunhyeSunhye KoreaMember

I have WGS samples.
Some samples is encoded with Phred+64 and the others is encoded with Phred+33
I map all sample using bwa-mem without converting Phred+64 to Phred 33.

I wonder whether I wonder whether GenomeSTRiP accept only Bam file encoded with Phred+33.
Otherwise, Can GenomeSTRiP accept Bam file encoded with Phred+64?
Can I work together with these files with Phred+64 and Phred+33 using GenomeSTRiP2.0 , if possible?


Best Answers


Sign In or Register to comment.