Difference between Genotype GVCFs and CombineGVCFs
I would like to be sure of the difference between those 2 tools.
From what I understand, GenotypeGVCFs somehow re-calculate likelihood and parameters (QUAL, DP, MQ...) for each variant positions present in at least 1 input sample. Right ? And is it not the case for CombineGVCFs?
Thank you for your help,