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Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
When using the VariantsToTable function, is there a way to force the genotypes to be numeric, i.e. 0/1 or 0/0 rather than the actual bases like G/T, G/G, etc.? I can't seem to find anything in the tool documentation, but maybe there's another way.