This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!
Oncotator integration with galaxy
i'm working on integrating tools to a galaxy plateform for cancer research, based on whole sequencing data.
Thus a question rise "suddenly". People here are used to perform task with a R script on the distant oncotator site. But this process should be internalized for obvious internal secure reasons.
So my question is : should i integrate all scripts from source (from the oncotator package i mean) in Galaxy or GATK, provided as a galaxy wrapper, has functions that are exactly the same as those included in this Oncotator package (i don't think so, but...) for annotation.
Has anyone tried that before ? Sorry if i ask in the wrong place.
Thanks in advance for your help.