To celebrate the release of GATK 4.0, we are giving away free credits for running the GATK4 Best Practices pipelines in FireCloud, our secure online analysis portal. It’s first come first serve, so sign up now to claim your free credits worth $250. Sponsored by Google Cloud. Learn more at https://software.broadinstitute.org/firecloud/documentation/freecredits

QUAL field value of VCF files after VQSR

Hi,

I saw "LowQual" in the QUAL field of some records in VCF files which has been VQSR. I wonder whether these records have ever been used in the VQSR. If they have been used in that step, but without tagging something like "VQSRTrancheSNP99.90to100.00", does it mean that they are somehow ok in terms of VQSR?

Thank you!

Emma

Tagged:

Best Answer

Answers

Sign In or Register to comment.