Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
I would like to better understand how the module SimulateReadsForVariants is working with VCF files.
Given a VCF file containing 10 samples, I expected the SimulateReadsForVariants to simulate 10 BAM files for each sample. The module however simulates only 1 BAM file.
How can we generate sample-specific simulated BAM files?
Do we have to create 10 VCF files containing only 1 sample each?
Many thanks for your lights,