Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Is the Knownsites parameter compulsory to be used in BaseRecalibrator ?
I would like to know about the -knownSites of the BaseRecalibrator. How to get the latest available list for this? How to use this, when we want to identify the unknown variant sites ? What are the steps need to be used instead of the "Quality score recalibration-CountCovariates, TableRecalibration" which were available in the older versions of GATK.