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I would like to know how to interprete the StrandOddsRatio (SOR) obtained with HC in GATK.
Here is a summary of the SOR values that I obtained:
Min. 1st Qu. Median Mean 3rd Qu. Max.
0.001 0.598 0.725 0.819 0.895 7.643
Do the values around 1 indicate no or low strand bias? And the values close to 0 and greater than 1 indicate a strand bias?