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VQRS Crashing from no StrandOddsRatio Annotation
I have done a multisample call with UnifiedGenotyper and annotated with -A StrandOddsRatio (including several other annotations). When running VQRS filtering with the -an SOR tag it crashes because of incorrect annotation. The vcf file does not contain SOR annotation so this is correct. When using VariantAnnotator to correct this there's no tag to annotate with StrandOddsRatio.
Can I annotate a UnifiedGenotyper calls with StrandOddsRatio or am I missing something?