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meanings of some column of CountVariants table in VariantEval output
The VariantEval provides many useful statistics for evaluation of the callsets. However, the documentations I could found in GATK website were somewhat out of date, resulting in some columns not easy to understand or guess. I have two questions:
1. What are the meanings of the nMNPs, nComplex, nSymbolic, nMixed, nHomDerived in a CountVariants table in a VariantEval report?
2. How can I found some formula or explanation of all the calculation in VariantEval?
Thanks a lot!