To celebrate the release of GATK 4.0, we are giving away free credits for running the GATK4 Best Practices pipelines in FireCloud, our secure online analysis portal. It’s first come first serve, so sign up now to claim your free credits worth $250. Sponsored by Google Cloud. Learn more at

Filter a joint VCF based on DP in one sample

Hi GATK team,

I have a joint VCF that contains three samples, I want to filter the VCF based on the DP in one sample. I noticed that SelectVariants can only select variants based on "INFO" field in the VCF. Any suggestions?

Many thanks,


Best Answer


Sign In or Register to comment.