The frontline support team will be slow on the forum because we are occupied with the GATK Workshop on March 21st and 22nd 2019. We will be back and more available to answer questions on the forum on March 25th 2019.
Bugfix: GCContent should be float instead of integer
Validating the vcf file which comes out of the VariantAnnotator is resulting in an error. The GC Content is a float and not an integer (which is stated in the INFO column).
At the moment we are do a search and replace ourselves, but it would be nice if it can be fixed in a next version of GATK.