Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Is it obligatory to go for Base Quality Score Recalibration (BQSR) after IndelRealignment step?

If I am not having information about known variants. Is it fine if I skip the BQSR step after indelRealignment step??


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