Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
VQSR tranches truth labels misplaced
The truth labels on my VQSR tranches plot seem to be misplaced. See attached image. I can decipher it, but thought I would let you know.
And while I'm at it. The other pdf generated by VR showing the 2D plots for all annotation combinations is not generated, if the VR output is specified to be in a sub folder. It can be generated in the sub folder, if the R script is moved to and executed in the main folder. I use gnuplot and matplotlib for plotting, so I don't know why this is. I noticed someone else having a similar issue on the forum the other day.