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How can I get these data sets used in VQSR ?
When I tried to call SNP/Indel through the V3.3 GATK, I found a problem, how can I get the following datasets?
True sites training resource: HapMap
True sites training resource: Omni
Non-true sites training resource: 1000G
Known sites resource, not used in training: dbSNP
Known and true sites training resource: Mills
Does GATK provide the corresponding vcf files such as "hapmap.vcf","omni.vcf","1000G.vcf""dbsnp.vcf""mills.vcf" ?