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Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

How can I get these data sets used in VQSR ?

When I tried to call SNP/Indel through the V3.3 GATK, I found a problem, how can I get the following datasets?

True sites training resource: HapMap
True sites training resource: Omni
Non-true sites training resource: 1000G
Known sites resource, not used in training: dbSNP
Known and true sites training resource: Mills

Does GATK provide the corresponding vcf files such as "hapmap.vcf","omni.vcf","1000G.vcf""dbsnp.vcf""mills.vcf" ?


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