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Why "Error: Exception processing cnp: Error running script Rscript" running genotyping.sh
I have just installed the GenomeSTRIP svtoolkit, version 2.00.1529. I ran the "installtest" scripts.
discovery.sh completed with no errors, but genotyping.sh errored out.
See attached file for the genotyping.sh log file as it ran showing the error stack trace.
The first error involved "FunctionEdge"; then a little bit later there was an error saying
"Exception processing cnp: Error running script Rscript".
What could bve wrong?
Is it a known bug in the svtoolkit, or is something wrong with my environment?
This is on a Centos6.3 Linux server.