Parsing VariantEval data

TristanTristan La Jolla, CAMember ✭✭
edited January 2015 in Ask the GATK team

VariantEval follows a strict format that is human readable but also the top few lines of each table more than hint that it's ready to be parsed by something else. Been wondering what that is, looks like Python... Is there a nice quick way to load all of these data into something like R or Python? I can imagine using grep to put each table into a file and load that into R but if the output was designed for a certain tool, it would be great to use that.

Thanks as always for the wonderful tools!

Example, what language or tool is this stuff for?

#:GATKTable:11:12:%s:%s:%s:%s:%s:%d:%d:%d:%.2f:%d:%.2f:;

#:GATKTable:CompOverlap:The overlap between eval and comp sites

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