Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Parsing VariantEval data
VariantEval follows a strict format that is human readable but also the top few lines of each table more than hint that it's ready to be parsed by something else. Been wondering what that is, looks like Python... Is there a nice quick way to load all of these data into something like R or Python? I can imagine using grep to put each table into a file and load that into R but if the output was designed for a certain tool, it would be great to use that.
Thanks as always for the wonderful tools!
Example, what language or tool is this stuff for?
#:GATKTable:CompOverlap:The overlap between eval and comp sites