Attention:
The frontline support team will be unavailable to answer questions on April 15th and 17th 2019. We will be back soon after. Thank you for your patience and we apologize for any inconvenience!

PED file structure for CalculateGenotypePosteriors walker

Hello,
I am analyzing exome data from a family with affected individuals in 3 generations. Thus, I have granparents-grandchilds relationships, cousins, etc... I tried to run calculate posteriors but the walker doesn't seem to be doing anything. I read somewhere in this forum that GATK walkers only accept trios. Is that true? If so, is there anyway to run this walker in a complex family representing several affected and unaffected individuals?

Thanks a lot in advance for your help

Best Answer

Answers

Sign In or Register to comment.