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HaplotypeCaller : Rod span ... isn't contained within the data shard without -nct option


I have a pb with HaplotypeCaller.
I saw that this error has been reported as linked with -nct option, but I did not use it.

Strangely enough, I think my command worked some times ago (before server restart ?)

All reference files I used are from the GATK bundle.


Best Answer


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