Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

I have all Allele frequency 0.5 or 1.0

I finished my RNA-seq variant callling using GATK pipeline described in your workflow.
But I realized that all the Allele Frequency(AF) values in the vcf files are 0.5 or 1.0.
Is it normal?

Answers

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