This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!
GATK realignment around local indel algorithm
Hi GATK team,
Though I have read the seminar slides for GATK indelrealignment, I still have no idear about how GATK does that for us, is there anyone can suggest? Say, give me a reference, or a brief ìntroduction.
Actually, what I care most is whether indelrealignment takes base quality into consideration.Thank you very much.