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Location of variant in multi-sample calling
While using your best practices pipeline, using multisample calling, I get these multi-allelic variants. As I am interested in the precise position of certain variants, I would like to know if there is a way to identify, where a variant is located. This is ofcause possible in most cases, but I have a subset of my variants, where I cannot see how this can be done
Examples from my VCF-file:
17 8045028 . CTTTTTTCTCCCCCTTGAACTTGAGCTCAATTCT CTTTTTCTCCCCCTTGAACTTGAGCTCAATTCT,C
9 32986030 . TAAAAAAAAAACAAAAAAAAAAAC TAAAAAAAAACAAAAAAAAAAAC,TAAAAAAAAAC,T,AAAAAAAAAAACAAAAAAAAAAAC
In the first example, I cannot see which "T" has been deleted - this could be any of them:
In the second example, I cannot see which "A" has been deleted:
Is there any way, I can get information on which one it is?