Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Haplotype caller for SNP calling from RNA seq data
I have a general question. Why is it recommended to use single sample for SNP calling from RNA-seq data when using Haplotype caller? Isn't possible to provide all the samples together for the SNP calling purpose? Is it a rather technical aspect of Haplotype Caller or it helps to reduce errors?
Thanks a lot in advance for your help,