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RealignerTargetCreator IndelRealigner : can I use a gzip output/input

lindenblindenb FranceMember ✭✭

Hi GATK team,
my jobs are currently running and I'm a little bit lazy to try this later: I saw that the .interval files produced by RealignerTargetCreator can be quite large. Can I use a ".interval.gz" extension on the command line of RealignerTargetCreator ? Can I use this *.gz file with IndelRealigner ?

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