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How to set resource in VariantRecalibrator With Queue

hulerhuler chinaMember
edited December 2014 in Ask the GATK team

Hello GATK team,
When I use the VariantRecalibrator, I need to set the resource as

-resource:hapmap,known=false,training=true,truth=true,prior=15.0 hapmap_3.3.b37.sites.vcf

When I use the VariantRecalibrator with Queue, I don't know how to set it in the scala script. In the Queue, we receive the parameter as (key value), but how can it be (key:value value)?

Answers

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