We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

GenotypeConcordance printInterestingSites argument

MarthaMartha CracowMember

Hi,
I didn't find the answer anywhere, so I'm asking here.
I'm using GATK 2.6-4. I used GenotypeConcordance to compare two datasets, and it was great, exactly what I needed. But then, I was interesting in the discordant sites, and I saw that printInterestingSites should be a good solution. But I can't make it work. Just adding in my command line "-sites filename" doesn't work, and I've tried to be creative in changing this option. Then I thought, that maybe this option isn't working in my GATK version.
Have I just done something wrong?

Best Answer

Answers

Sign In or Register to comment.