Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Problem with debugging AnalyzeCovariates error in R
I encounter the "RScript exited with 1. Run with -l DEBUG for more info" error when trying to make recalibration plots using Rscript. However, I do have all the required packages installed on my computer, including gsalib, which seems to be the problem. When I run with -l DEBUG, I get the following information:
Error in library(gsalib) : there is no package called ‘gsalib’
The thing is that I am using my computer but working in a cluster, so not directly on my computer. Should I have the packages installed in the cluster or is it fine that I've installed the packages on my computer? I'm a bit new to this, so I apologize if this question is a bit basic.