Test-drive the GATK tools and Best Practices pipelines on Terra
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Max ploidy for pooled seq HC/UG runs?
Is there an upper limit of cumulative -ploidy to HC or UG runs? HC threw me an error if the cumulative ploidy exceeded 100.
UG keeps ever increasing its runtime if my cumulative ploidy exceeds ~100.
If this is known behavior, please point me to relevant threads. Be nice, please
Generally speaking, how would you approach the analysis of multiple pools of 24 diplod individuals (i.e. ploidy per pool = 24 for organelles and 48 for autosomes)?