SVGenotyperWalker crashing with JRE fatal error, frame: V [libjvm.so+0x71ab43] numa_error+0x1583

trbtrb San FranciscoMember

Hello, SVGenotyperWalker is crashing with the error. Please see attached files for the output and error logs.
Thanks!

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Answers

  • trbtrb San FranciscoMember

    Thanks. Yes, it was LSF hitting the time limit (3 days). Not sure why it is so slow though. I'll try to look for a pattern as you suggest.

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