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Genotypes and VariantsToTable walker

sanderpajusalusanderpajusalu Tartu, EstoniaMember

Hi

I just started using VariantsToTable tool, which works great. I am still facing a problem with genotype fields extracted from vcf as the numbered genotypes (0/1) are changed to nucleotides (T/C). That is something that I do not want. Therefore, I would like to ask, if there is a way to stop this happening, so that the walker leaves genotypes to number format as they are in vcf file?

Thank you!

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