This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!
I am using the VariantsToTable walker to convert my vcfs to tabular format. Previously I have done same filtering with vcftools in my vcfs input files. VariantsToTable walker output file only contains just a few of the SNPs I have in my input file. Specifically, those which have the tag "PASS" in FILTER column. I need a table with all the input SNPs, regardless FILTER column value. Is there any way to do it?