Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
AD for 0/0 site
When I used UnifiedGenotyper to emit all sites, for 0/0 site, I only got GT and DP tags. Is it possible to get AD tag for these sites and get actual depth for these sites, not downsampling coverage (I can see the maximum value is 200 if I ask for downsampling to 200 when running UnifiedGenotyper)