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AD for 0/0 site

ying_sheng_1ying_sheng_1 Member ✭✭
in Ask the GATK team

Hi Geraldine,

When I used UnifiedGenotyper to emit all sites, for 0/0 site, I only got GT and DP tags. Is it possible to get AD tag for these sites and get actual depth for these sites, not downsampling coverage (I can see the maximum value is 200 if I ask for downsampling to 200 when running UnifiedGenotyper)

thanks!

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