Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Regarding Ploidy Option of HaplotypeCaller
I recently checked your GATK latest version (3.3),
and found that you made the option of "ploidy" for usage of HaplotypeCaller.
We checked it and discovered that it is only available with the number less than 20 (till 19).
Do you have any reasons for making the upper limit of the ploidy option?
or any plans of adjustment of limitation to higher values? (such as 50)
I always thank you all~!!