Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

a question as to how to run Mutect with single and paired end reads

Hi there,
I was wondering if I can use Mutect to call variants on tumor input as single-end library and normal input as paired-end library? Or should I use both inputs as single-end or paired-end?

Thank you

Best Answer


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