Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
QUAL scores for non-variant loci
I am using HaplotypeCaller in with -ERC BP_RESOLUTION to generate calls at all loci in my target region. My question is that I see QUAL only for variant positions. Is there a way I can get QUAL reported for non-variant () loci as well?
Thanks in advance