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Intensity Rank Sum Annotator Overlapping Calls

dantakidantaki La JollaMember

I noticed when I run the Intensity Rank Sum Annotator I get NA values for CNVs that overlap.

For example.

chr1: 25000-50000
chr1: 40000-90000

In the report file, the first call has a Pvalue, but the second one is NA. I've noticed this for all overlapping calls.

I cannot merge the calls because they are not within 50% recip overlap.

What can I do to avoid this

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