Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Question about joint calling
I have a question regarding types of reads in bam files in joint calling. That is, can we do joint calling using both single-end and paired-end mapped reads as input files? Or should we stick to only one type, single end or pared end for consistency and technical reasons?