Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
I only have NGS data from 20 person, the data set is too small to do variant recalibration. Therefore,I want to merge the whole exome data from 1000 Genome.
**But my NGS data had been use " -L argument " to choose the intervals of 100 gene,so should whole exome data from 1000 Genome also have to use " -L argument " to choose 100 gene before I merge the data with NGS data from 20 person? **
Thanks for help